Gviz - Plotting data and annotation information along genomic coordinates
Genomic data analyses requires integrated visualization of known genomic information and new experimental data. Gviz uses the biomaRt and the rtracklayer packages to perform live annotation queries to Ensembl and UCSC and translates this to e.g. gene/transcript structures in viewports of the grid graphics package. This results in genomic information plotted together with your data.
Last updated 24 days ago
visualizationmicroarraysequencing
13.32 score 75 stars 49 packages 1.3k scripts 5.5k downloadsseqLogo - Sequence logos for DNA sequence alignments
seqLogo takes the position weight matrix of a DNA sequence motif and plots the corresponding sequence logo as introduced by Schneider and Stephens (1990).
Last updated 24 days ago
sequencematching
10.52 score 4 stars 29 packages 284 scripts 5.6k downloads